Protein Bagels With Whole Wheat Flour

Highlighted under: Smart Favorites

I love making these Protein Bagels with Whole Wheat Flour for a wholesome start to my day. They're not only delicious but also packed with protein, making them a perfect addition to my breakfast routine. The nuttiness of whole wheat flour combined with the chewy texture of bagels creates a satisfying bite. Plus, they’re incredibly easy to make at home, allowing me to customize the flavors with my favorite toppings. Trust me, once you try these, you'll find them hard to resist!

Elodie Fairfax

Created by

Elodie Fairfax

Last updated on 2026-01-24T10:57:34.309Z

When I first decided to make these protein-packed bagels, I was excited about the idea of combining nutrition with a classic favorite. After several experiments, I learned that letting the dough rest for a bit helps develop the gluten, giving the bagels a perfect rise. I also discovered that boiling them before baking not only enhances the chewiness but also locks in the flavor.

To make things even better, I love to experiment with different toppings. A sprinkle of sesame seeds or poppy seeds adds a delightful crunch, making each bite extraordinary. These bagels are perfect toasted with a light spread of cream cheese or avocado, and they’re great for meal prep!

Why You Will Love This Recipe

  • High in protein for a filling breakfast
  • Made with wholesome ingredients for a healthier choice
  • Chewy texture that satisfies cravings

Tips for Perfectly Chewy Bagels

The texture of your bagels is crucial, and achieving that perfect chewiness starts with the dough. After kneading for about 5 minutes, the dough should be smooth and elastic. If it feels too dry or crumbly, incorporate a little more warm water, one tablespoon at a time, until it reaches the right consistency. Additionally, resting the dough for about 10 minutes allows the gluten to relax, which further enhances the chewy texture.

When boiling the bagels, ensure that the water reaches a rolling boil before adding them in. Boiling not only helps set the bagel’s crust but also contributes to its density. If you notice the dough floating immediately, that’s a good sign! You want the bagels to cook for one minute on each side to develop the crust properly. If they are undercooked, they may end up too soft after baking.

Ingredient Insights

Whole wheat flour plays a pivotal role in this recipe, adding nuttiness and a hearty texture that balances the lightness of the protein powder. If you prefer a lighter bagel, you can substitute half of the whole wheat flour with all-purpose flour. However, keep in mind that this adjustment may alter the nutrient profile and flavor. A blend retains the wholesome benefits while producing a tender bagel.

Protein powder, whether unflavored or vanilla, elevates the bagels' nutritional value, providing an excellent source of protein that keeps hunger at bay. If you're looking for a dairy-free option, consider using plant-based protein powders like pea or hemp. Just ensure that whichever protein powder you choose is appropriate for baking; the texture should blend seamlessly with your other ingredients.

Serving and Storing Your Bagels

These protein bagels are incredibly versatile! Enjoy them fresh out of the oven, topped with your favorite spreads like cream cheese, avocado, or nut butter. You can also toast them for extra crunch. For a fun twist, try adding ingredients into the dough before shaping, such as chopped herbs, sun-dried tomatoes, or cheese, to create a unique flavor profile.

Storing your bagels properly is key to maintaining their freshness. Once they cool completely, place them in an airtight container at room temperature for up to 2 days. For longer storage, freeze them individually in plastic wrap, then transfer to a freezer bag. Thaw bagels at room temperature or pop them straight into a toaster for a quick reheat without losing texture.

Ingredients

Gather the following ingredients before you start making your protein-packed bagels:

Ingredients

  • 2 cups whole wheat flour
  • 1 cup protein powder (unflavored or vanilla)
  • 1 tablespoon baking powder
  • 1 teaspoon salt
  • 1 tablespoon honey or maple syrup
  • 1 cup warm water
  • 1 tablespoon olive oil
  • Optional toppings: sesame seeds, poppy seeds, everything bagel seasoning

Ensure to have all ingredients ready to streamline the preparation process.

Instructions

Follow these steps to create your delicious protein bagels:

Prepare the Dough

In a large bowl, whisk together whole wheat flour, protein powder, baking powder, and salt. In a separate bowl, mix warm water, honey, and olive oil until combined. Gradually add wet ingredients to the dry mixture and stir until a dough forms.

Knead the Dough

Transfer the dough to a floured surface and knead for about 5 minutes until smooth. Let the dough rest for 10 minutes.

Shape the Bagels

Divide the dough into 8 equal pieces. Roll each piece into a ball, then use your finger to create a hole in the center, shaping it into a bagel.

Boil the Bagels

Bring a large pot of water to a boil. Carefully drop in the bagels, a few at a time, and boil for 1 minute on each side. Remove and let cool for a moment.

Bake the Bagels

Preheat your oven to 375°F (190°C). Place the boiled bagels on a baking sheet lined with parchment paper. If desired, sprinkle with toppings. Bake for 20-25 minutes until golden brown.

Enjoy your freshly baked protein bagels warm or toasted!

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Pro Tips

  • For extra flavor, consider adding herbs or spices to the dough before baking. Also, these bagels freeze well, so make a double batch to enjoy later!

Troubleshooting Common Issues

If your bagels don’t rise as expected, it could be due to your yeast not activating properly. Always make sure your warm water is between 100°F and 110°F, as water that is too hot can kill the yeast. A simple test is to mix the yeast with warm water and a pinch of sugar. If it becomes frothy after about 5–10 minutes, you know it’s active and ready to use.

Another common issue is the bagels sticking to the boiling pot. To prevent this, ensure you’re using enough water and avoid overcrowding the pot when boiling. If they do stick, try using a slotted spoon to gently lift and separate them before removing them from the water. This way, you can achieve a more uniform texture across all your bagels.

Scaling the Recipe

This bagel recipe is easily scalable if you want to make a larger batch for meal prep or a gathering. Simply double or triple the ingredients while maintaining the same ratios. Keep in mind, you may need a larger mixing bowl or more surface area for kneading. One handy tip is to use a kitchen scale for measuring flour and protein powder for more accuracy, especially when scaling up.

When baking in larger quantities, you may also want to adjust the baking time slightly. Larger batches may require an extra few minutes in the oven. Keep an eye on the bagels as they bake; the ideal color is a rich golden-brown, ensuring they’re cooked through without being dried out. You can also rotate your baking sheets halfway through to ensure even cooking.

Questions About Recipes

→ Can I use all-purpose flour instead of whole wheat?

Yes, you can substitute all-purpose flour, but the texture and flavor will differ slightly.

→ How long can I store these bagels?

You can store them in an airtight container at room temperature for up to 3 days or freeze them for up to 3 months.

→ Can I add other ingredients to the dough?

Absolutely! You can mix in seeds, herbs, or even cheese to diversify the flavor.

→ What if I don't have protein powder?

If you prefer not to use protein powder, you can replace it with additional flour, though the protein content will be lower.

Protein Bagels With Whole Wheat Flour

I love making these Protein Bagels with Whole Wheat Flour for a wholesome start to my day. They're not only delicious but also packed with protein, making them a perfect addition to my breakfast routine. The nuttiness of whole wheat flour combined with the chewy texture of bagels creates a satisfying bite. Plus, they’re incredibly easy to make at home, allowing me to customize the flavors with my favorite toppings. Trust me, once you try these, you'll find them hard to resist!

Prep Time20 minutes
Cooking Duration25 minutes
Overall Time45 minutes

Created by: Elodie Fairfax

Recipe Type: Smart Favorites

Skill Level: Intermediate

Final Quantity: 8 bagels

What You'll Need

Ingredients

  1. 2 cups whole wheat flour
  2. 1 cup protein powder (unflavored or vanilla)
  3. 1 tablespoon baking powder
  4. 1 teaspoon salt
  5. 1 tablespoon honey or maple syrup
  6. 1 cup warm water
  7. 1 tablespoon olive oil
  8. Optional toppings: sesame seeds, poppy seeds, everything bagel seasoning

How-To Steps

Step 01

In a large bowl, whisk together whole wheat flour, protein powder, baking powder, and salt. In a separate bowl, mix warm water, honey, and olive oil until combined. Gradually add wet ingredients to the dry mixture and stir until a dough forms.

Step 02

Transfer the dough to a floured surface and knead for about 5 minutes until smooth. Let the dough rest for 10 minutes.

Step 03

Divide the dough into 8 equal pieces. Roll each piece into a ball, then use your finger to create a hole in the center, shaping it into a bagel.

Step 04

Bring a large pot of water to a boil. Carefully drop in the bagels, a few at a time, and boil for 1 minute on each side. Remove and let cool for a moment.

Step 05

Preheat your oven to 375°F (190°C). Place the boiled bagels on a baking sheet lined with parchment paper. If desired, sprinkle with toppings. Bake for 20-25 minutes until golden brown.

Extra Tips

  1. For extra flavor, consider adding herbs or spices to the dough before baking. Also, these bagels freeze well, so make a double batch to enjoy later!

Nutritional Breakdown (Per Serving)

  • Calories: 250 kcal
  • Total Fat: 4g
  • Saturated Fat: 0.5g
  • Cholesterol: 0mg
  • Sodium: 200mg
  • Total Carbohydrates: 45g
  • Dietary Fiber: 6g
  • Sugars: 2g
  • Protein: 14g